Index

_

__init__() (pep.pep.DistributionFunction method) (pep.pep.DistributionRule method) (pep.pep.Membrane method) (pep.pep.MembraneStructure method) (pep.pep.NumericalPsystem method) (pep.pep.Pobject method) (pep.pep.ProductionFunction method) (pep.pep.Program method)

C

column (pep.pep.Token attribute)

D

distribute() (pep.pep.DistributionFunction method), [1]

DistributionFunction (class in pep.pep), [1] DistributionRule (class in pep.pep), [1]

E

evaluate() (pep.pep.ProductionFunction method), [1]

I

isActivatedByEnzyme() (pep.pep.Program method), [1]

L

line (pep.pep.Token attribute)

M

Membrane (class in pep.pep), [1]

MembraneStructure (class in pep.pep), [1]

N

NumericalPsystem (class in pep.pep), [1]

O

openCsvFile() (pep.pep.NumericalPsystem method), [1]

OperatorType (class in pep.pep)

P

pep.pep (module) Pobject (class in pep.pep), [1] print() (pep.pep.DistributionRule method), [1] (pep.pep.Membrane method), [1] (pep.pep.NumericalPsystem method), [1] (pep.pep.Program method), [1]

print_token_by_line() (in module pep.pep) process_tokens() (in module pep.pep) processPostfixOperator() (in module pep.pep) ProductionFunction (class in pep.pep), [1] Program (class in pep.pep), [1]

R

readInputFile() (in module pep.pep)

runSimulationStep() (pep.pep.NumericalPsystem method), [1]

S

simulate() (pep.pep.NumericalPsystem method), [1]

T

Token (class in pep.pep)

tokenize() (in module pep.pep) type (pep.pep.Token attribute)

V

value (pep.pep.Token attribute)